Ab initio water hexamers and octamers: tool to study hydrogen-bonded pattern in liquid water
Fourteen different structures of water hexamer found ab initio within a 6- 311G** basis set in the interval of 1.7 kcal/mol above the global minimum represent an unprecedently wide range of conformational plasticity of liquid water. The present work also provides the first ab initio demonstration...
Gespeichert in:
Datum: | 1998 |
---|---|
1. Verfasser: | |
Format: | Artikel |
Sprache: | English |
Veröffentlicht: |
Інститут фізики конденсованих систем НАН України
1998
|
Schriftenreihe: | Condensed Matter Physics |
Online Zugang: | http://dspace.nbuv.gov.ua/handle/123456789/118939 |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
Назва журналу: | Digital Library of Periodicals of National Academy of Sciences of Ukraine |
Zitieren: | Ab initio water hexamers and octamers: tool to study hydrogen-bonded pattern in liquid water / E. Kryachko // Condensed Matter Physics. — 1998. — Т. 1, № 2(14). — С. 213-238. — Бібліогр.: 28 назв. — англ. |
Institution
Digital Library of Periodicals of National Academy of Sciences of Ukraineid |
irk-123456789-118939 |
---|---|
record_format |
dspace |
spelling |
irk-123456789-1189392017-06-02T03:02:29Z Ab initio water hexamers and octamers: tool to study hydrogen-bonded pattern in liquid water Kryachko, E. Fourteen different structures of water hexamer found ab initio within a 6- 311G** basis set in the interval of 1.7 kcal/mol above the global minimum represent an unprecedently wide range of conformational plasticity of liquid water. The present work also provides the first ab initio demonstration of the existence of pentacoordinated water clusters. Чотирнадцять різних структур гексамера води, які знайдені методом ab initio в базисі 6-311G** в інтервалі 1.7 kcal/mol вище глобального мінімуму, є безпрецедентним прикладом високої конформаційної пластичності рідкої води. Дана робота також вперше демонструє існування пентакоординаційних кластерів води на рівні прецизійних ab initio розрахунків. 1998 Article Ab initio water hexamers and octamers: tool to study hydrogen-bonded pattern in liquid water / E. Kryachko // Condensed Matter Physics. — 1998. — Т. 1, № 2(14). — С. 213-238. — Бібліогр.: 28 назв. — англ. 1607-324X DOI:10.5488/CMP.1.2.213 PACS: 61.20.Ja, 61.25.Em, 61.20.Gy, 62.30.+d, 63.20.Pw, 63.90.+t, 64.70.Ja, 65.50.+m, 64.30.+t http://dspace.nbuv.gov.ua/handle/123456789/118939 en Condensed Matter Physics Інститут фізики конденсованих систем НАН України |
institution |
Digital Library of Periodicals of National Academy of Sciences of Ukraine |
collection |
DSpace DC |
language |
English |
description |
Fourteen different structures of water hexamer found ab initio within a 6-
311G** basis set in the interval of 1.7 kcal/mol above the global minimum
represent an unprecedently wide range of conformational plasticity of liquid
water. The present work also provides the first ab initio demonstration of
the existence of pentacoordinated water clusters. |
format |
Article |
author |
Kryachko, E. |
spellingShingle |
Kryachko, E. Ab initio water hexamers and octamers: tool to study hydrogen-bonded pattern in liquid water Condensed Matter Physics |
author_facet |
Kryachko, E. |
author_sort |
Kryachko, E. |
title |
Ab initio water hexamers and octamers: tool to study hydrogen-bonded pattern in liquid water |
title_short |
Ab initio water hexamers and octamers: tool to study hydrogen-bonded pattern in liquid water |
title_full |
Ab initio water hexamers and octamers: tool to study hydrogen-bonded pattern in liquid water |
title_fullStr |
Ab initio water hexamers and octamers: tool to study hydrogen-bonded pattern in liquid water |
title_full_unstemmed |
Ab initio water hexamers and octamers: tool to study hydrogen-bonded pattern in liquid water |
title_sort |
ab initio water hexamers and octamers: tool to study hydrogen-bonded pattern in liquid water |
publisher |
Інститут фізики конденсованих систем НАН України |
publishDate |
1998 |
url |
http://dspace.nbuv.gov.ua/handle/123456789/118939 |
citation_txt |
Ab initio water hexamers and octamers: tool to study hydrogen-bonded pattern in liquid water / E. Kryachko // Condensed Matter Physics. — 1998. — Т. 1, № 2(14). — С. 213-238. — Бібліогр.: 28 назв. — англ. |
series |
Condensed Matter Physics |
work_keys_str_mv |
AT kryachkoe abinitiowaterhexamersandoctamerstooltostudyhydrogenbondedpatterninliquidwater |
first_indexed |
2025-07-08T14:56:26Z |
last_indexed |
2025-07-08T14:56:26Z |
_version_ |
1837091088097083392 |
fulltext |
Condensed Matter Physics, 1998, Vol. 1, No 2(14), p. 213–238
Ab initio water hexamers and
octamers: tool to study
hydrogen-bonded pattern in liquid
water
E.Kryachko 1,2,3
1 Bogolyubov Institute for Theoretical Physics, Kyiv-143, Ukraine 252143
2 Cherry L. Emerson Center for Scientific Computation and Department of
Chemistry Emory University, Atlanta, GA 30322, U. S. A.
3 Department of Chemistry, The Johns Hopkins University, Baltimore, MD
21218, U. S. A.
Received March 18, 1998
Fourteen different structures of water hexamer found ab initio within a 6-
311G** basis set in the interval of 1.7 kcal/mol above the global minimum
represent an unprecedently wide range of conformational plasticity of liquid
water. The present work also provides the first ab initio demonstration of
the existence of pentacoordinated water clusters.
Key words: liquid water, H-bond pattern, orientational defect, water
cluster, “Dangling” bond, Ab initio HF 6-311∗∗ calculation
PACS: 61.20.Ja, 61.25.Em, 61.20.Gy, 62.30.+d, 63.20.Pw, 63.90.+t,
64.70.Ja, 65.50.+m, 64.30.+t
1. Introduction
Liquid water is the most mysterious substance for natural scientists because of
its great importance in the Universe and its versatile abnormal properties are far
from being completely understood. It is formed due to hydrogen or, shortly, H-
bonds and it is, in fact, its H-bonded pattern with interconnectivity and tortuosity
that always plays the role of the key starting point in numerous studies aimed at
resolving water paradigm [1] (see also [2]).
It has been known for a long time that H-bonded patterns of liquid water
and hexagonal ice Ih are tetrahedral [1(a)]. They were also believed to have much
more similarities between them. That is why ice was often chosen as a reasonable
reference model for the study of an H-bonded water pattern. The aforementioned
tetrahedrality originates, in fact, from the tetrahedral charge distribution around
c© E.Kryachko 213
E.Kryachko
the oxygen atom in a water monomer possessing two positive partial charges at
the positions of hydrogen atoms and two negative partial charges that refer to
ear-like lone electron pair. This idea was expressed by Bernal-Fowler-Pauling and
called ice rules [3]:
(i) There are exactly two hydrogen atoms that belong to each oxygen atom with
the O-H bond length of 1 Å;
(ii) There is exactly one hydrogen atom that occupies each O· · ·O bond between
any pair of neighbouring oxygen atoms.
What might an H-bonded pattern of liquid water be like then? Well, obviously,
like ice. Its “icelikeness” is manifested in the fact that each oxygen atom is involved
in two covalent and two hydrogen bonds, or equivalently, that each water molecule
is four-bonded and is surrounded by four nearest-neighbour water molecules. The
latter ones compose its first coordination shell. Within the Bernal-Fowler-Pauling
H-bonded pattern, the oxygen atoms are arranged in such a way that all the O-
O-O bond angles between the nearest-neighbour water molecules are tetrahedral,
i. e., equal to circa 109.47o. The hydrogen atoms decorate therein O-O “bonds”,
establishing the so-called “hydrogen bigamy”.
Let us ask then the following question. Does this “icelikeness” adequately de-
scribe the whole H-bonded pattern of liquid water? Or, in other words. Does liquid
water contain any “patches” in its pattern that in fact violate Bernal-Fowler-
Pauling ice rules and are crucial for turning liquid water into what it actually is?
The answers are certainly ‘no’ and ‘yes’, respectively. It is now apparently pretty
hard to believe in resolving a liquid water paradigm denying the very existence of
such non-icelikeness “patches”. To put it simpler, water can be roughly described
by a “two-state” model with one “state” obeying Bernal- Fowler-Pauling rules and
another one violating them. The “two-state” model satisfies either the energetical
or geometrical criterion imposed on the H-bonded pattern [4-6]. The former sug-
gests that two water molecules are H-bonded if their interaction energy V < VHB.
The negative threshold H-binding energy VHB plays the role of a model cutoff pa-
rameter. It is allowed to take on a sequence of values, VHB = −2nε with integer n
from interval (10, 41) and ε = 0.07575 kcal/mol. VHB varies then from - 6.2115 to
- 1.5150 kcal/mol.
According to the geometrical criterion (for current references see [7]), two water
molecules are H-bonded if the following three constraints are accomplished alto-
gether. The first one is the constraint on interoxygen separations that must be less
than Rthr = 3.5 - 3.7 Å [8]. Rthr determines the position of the first minimum of
the gOO radial distribution function and defines, in fact, the boundary of the first
coordination shell. The second constraint is imposed on the distance between the
oxygen atom of the acceptor water molecule and the hydrogen atom of the donor
one. It should be smaller than rthr = 2.45 Å, that is, the distance at which the
first minimum of the radial distribution function gOH takes place [8]. The third
constraint limits angle δH between the participating oxygen, the hydrogen of the
donor molecule and the oxygen atom of the acceptor molecule: δH > 160o. This
constraint seems to be quite fragile and is often omitted because a reasonable de-
214
H-bonded pattern in water
viation of δH from 160o to smaller angles indicates a stronger nonlinearity of an
H-bond. These constraints are sometimes supplemented by another one imposed
on the values of the lone pair-oxygen-oxygen angle.
Regarding the O-O distribution function gOO of liquid water at 25o C [8], its
first maximum is sharply peaked at 2.86 Å and its integral from zero to Rthr,
which is interpreted as the mean number of water molecules within the first co-
ordination shell, is about 4.5. This implies that the H-bonded pattern of liquid
water partly possesses five-fold coordinated “patches”. Their very existence un-
ambiguously shows how far real liquid water is from that modelled by the Bernal-
Fowler-Pauling rules. One may even insist that its natural perfection is, in fact, in
its imperfection which makes water so anomalous and so mysterious for natural
science. In terms of patterns, this imperfection might be explained by the fact
that water possesses some sort of defects, namely, such “patches” in its H-bonded
pattern where the Bernal-Fowler-Pauling rules are violated. It has been thought
that these defects manifest themselves in many ways, for instance, in conductiv-
ity, in water restructuring resulting in a flow of water, in interpreting the Raman
[9,10] and infrared spectra [1]. They are usually divided into two types: ionic and
orientational, depending on which the Bernal-Fowler-Pauling ice rule is violated.
In the present work we focus only on orientational defects which represent
the violation of the second Bernal-Fowler-Pauling rule. The simplest model of an
orientational defect was a long time ago suggested by Bjerrum [11(a)] (see also
[1]). The Bjerrum orientational defects are of two types. One corresponds to the
“empty” O · · ·O bond and is called L-defect [11(b)]. Another one, D-defect [11(b)]
is, in fact, a doubly occupied bond O - H · · · H - O. This definition of orientational
defects is rather schematic and does not take into account the cooperative nature
of H-bonding in liquid water. The progress towards understanding the nature of
orientational defects was made due to the first and in some sense semi-empirical
calculations by Dunitz [12(a)], Cohan et al. [12(b)], and Eisenberg and Coulson
[12(c)] (see also [12(d-h)]). These calculations show that an orientational defect
is actually some area of the H-bonded pattern around an “empty” or doubly oc-
cupied H-bond that should include some distorted H-bonds around. Distortion is
primarily thought in terms of δH angle whose value in the range of 160o − 130o
describes a leaned or nonlinear H- bond that converts to the so-called bifurcated
H-bond when this angle approaches 120o − 100o. A physical model of a solitonic-
type orientational defect where the central part is, in fact, a sort of a bifurcated
H-bond was elaborated in [13] (for recent review see [14]).
A bifurcated H-bond is such a specific type of H-bond where the hydrogen atom
simultaneously participates in or donates two hydrogen bonds. In other words,
the hydrogen atom is shared by a couple of oxygen atoms simultaneously [9].
It is believed that these bonds contribute significantly to the Raman [10] and
infrared [1] (see also [13(b)]) spectra of liquid water. It is also believed that they are
important in mobility of water molecules. This view was supported experimentally
[15] and by computer simulations [16,17]. However, it should be stressed that all
these Bjerrum-type defects rely on the tacit assumption of preserving a four-fold
215
E.Kryachko
coordination. It has been recently suggested [17] that a five-fold “patch” is a new
type of an orientational defect with a bifurcated H-bond which appears as a result
of approaching the fifth water molecule (see also [10(b)]). As suggested in [17] as
well, this “patch” facilitates a transition from one Bernal-Fowler-Pauling pattern
to another through a lowered energy barrier. The similar model of a five-fold
“patch” was discussed in [18]. There is still another very specific feature of liquid
water worth mentioning. It is the O-O-O bond angle distribution function that,
according to the recent studies [19] (see also [17(b), 18]), reveals two maxima. One
corresponds to the tetrahedral bond angle. Another one, peaked at ∠O-O-O = 60o,
demonstrates that the corresponding water molecules are settled in nontetrahedral
directions.
In this context, pentacoordinated “patches” within an H-bonded pattern of
liquid water are an appealing concept, since they constitute a simple and, to some
extent, a rather universal principle of the underlying liquid water dynamics. The
aim of the present paper is to reveal such “patches” in water clusters by means
of performing ab initio search over their total potential energy surfaces and to
study the properties of these defects. Section II deals with the computational
GAUSSIAN-type methodology of this work. The next Section III starts with a
brief description of the present status of ab initio water clusters and continues
with the exhaustive search of the total potential energy surface of water hexamer
cluster to reveal novel lower-lying water hexamer structures and in particular those
of hexamers and octamers that possess pentacoordinated “patches”. This is, in
fact, the first evidence of ab initio five-fold coordinated water clusters. Section VI
discusses and summarizes the present work.
2. Computational methodology
All the calculations were performed with the Gaussian-94 suite of programs
[20] at the Cherry L. Emerson Center for Scientific Computation of Emory Uni-
versity in Atlanta. The ground-state geometry of water clusters was optimized at
the Hartree-Fock level of computation with the triply split valence 6-311G** ba-
sis set of 180 basis functions that includes polarization functions on the oxygen
and hydrogen atoms in particular [21]. In all the computations, no constraints
were imposed on the geometry of water clusters. Full geometrical optimization
was performed for each water cluster structure, and the attainment of the energy
minimum was verified by calculating the vibrational frequencies that result in the
absence of negative eigenvalues. Default options were used for the SCF convergence
and for the threshold limits determining the final changes in the maximum forces
and displacements in the geometry optimization. Vibrational modes and the corre-
sponding frequences are based on a harmonic force field. Empirical scaling factors
were not used. For conciseness, the tables report only the most intensive infrared
(IR) and Raman active bands for which IR intensity and Raman activity exceed
100 km/mol and 20 Å
4
/amu, respectively.
216
H-bonded pattern in water
3. Pentacoordinated water clusters
3.1. Prelude: hexamer and octamer
Study of water clusters is one of promising ways to resolve the liquid water
paradigm. It is trivial, on the one hand, that a larger cluster better mimics bulky
water. On the other hand, it is also quite evident that a larger cluster possesses
a richer potential energy surface picture. It is then a rather well-spread and rea-
sonable belief that to grasp the water paradigm, it might be sufficient to study
those water cluster structures that occupy lower-lying energy minima on the po-
tential energy surface. Should we be confident with this belief? Apparently, ‘yes’,
if among lower-lying water cluster structures there are, in particular, those with
five-fold coordinated water molecules.
Hexamer and octamer water clusters were the subject of a number of ab initio
studies [22,23]. It has been recently shown [22(d)] that at the HF/6-311G** level
of the computational theory, the global minimum of the hexamer potential energy
surface is attained by prism structure. There are also two lower-lying local minima,
one of which, corresponding to the cyclic chair- type structure, is 0.84 kcal/mol.
Another one occupied by the boat-like structure distances from the chair-type
one by 1.08 kcal/mol. There is yet another global minimum found at the cage-
like water hexamer cluster with 8 H-bonds [23(d-g)]. To resolve this controversy,
we have done an exhaustive search of the landscape of the total potential energy
surfaces of water hexamer. The result of this search is reported in table 1 for
energy, zero-point vibration energy (ZPVE) enthalpy and entropy, and in table 2
– for rotational constants and the total dipole moment and are displayed in figure
1. As it is seen in figure 1, three prism structures of (H2O)6 are at the bottom of
the total potential energy surface. Prism I occupies its global minimum, but two
others lie very close, at 2.4 and 5.8 cm−1, taking the zero-point vibration energy
into account. Five cage-type structures are followed by them. They are shown in
figure 2. Table 2 demonstrates a good agreement of rotational constants for cages
calculated in the present work and reported in [23(g)]. Four lower-lying cages I -
IV possess very particular geometries. Their interoxygen distances between O3 and
O4 are 3.577, 3.577, 3.466, and 3.570 Å, respectively. This implies that according
to the first geometrical constraint these are precisely “dangling” bonds because of
the absence of a hydrogen atom between these oxygens. Furthermore, some O-O-
O interbond angles move away from the tetrahedral values to lower angles. For
example, in cage I, ∠O3−O14−O4 = 75.86o; in cage II, ∠O3−O14−O4 = 75.85o;
in cage III, ∠O3 − O15 − O4 = 70.99o; in cage IV, ∠O3 − O14 − O4 = 75.49o; and
finally, in cage VI, ∠O1−O15−O4 = 75.52o. The cage structure of water hexamer
mimics the basic unit of one of the high-density polymorphs of ice, ice VI (compare
with [1(a)], figure 3.8).
Proceding to the next structures, it is worth mentioning that prism VI is exactly
the one found in [22(d)] at the global minimum. It is interesting that the open prism
structure shown in figure 3 with a very high dipole moment of 4.38 D appears in
the present list of lower-lying structures of water hexamer. Another cage structure,
217
E.Kryachko
cage VI displayed in figure 4, is followed by an open prism and also possesses a
rather high dipole moment equal to 3.45 D. Chair- or ring-type structure with
Table 1. Energy, enthalpy H, entropy S, and zero-point vibrational energy ZPVE
of lower-lying water hexamers.
Structure - Energy ∆E ZPVE - Enthalpy ∆H S
+456 hartrees kcal/mol kcal/mol +456 hartrees kcal/mol cal/mol K
chair 0.356702756 2.3619426 99.85516 0.180874 1.708691 132.506
0.7666526 0.113401
cageVI 0.357035657 2.1530463 100.99548 0.180491 1.949024 121.942
1.6980763 1.494054
op. prism 0.357431391 1.9047220 100.74973 0.181046 1.600760 123.652
1.2040020 0.900040
prism IV 0.358047985 1.5178074 101.30789 0.181304 1.438864 119.300
1.3752474 1.296304
prism VI 0.358048203 1.5177980 101.30876 0.181303 1.439492 119.297
1.3761080 1.297757
prism V 0.358048107 1.5177308 101.30871 0.181303 1.439492 119.301
1.3759908 1.297752
cage V 0.358758406 1.0720161 101.01288 0.182218 0.865327 121.718
0.6344461 0.427757
cage IV 0.358944226 0.9554135 101.09977 0.182346 0.785006 121.111
0.6047335 0.434326
cage III 0.3590113236 0.9133095 101.10253 0.182410 0.744846 120.990
0.5653895 0.396926
cage II 0.359012959 0.9122833 101.10311 0.182409 0.745474 120.983
0.5649433 0.398134
cage I 0.359013050 0.9122262 101.09889 0.182410 0.744846 121.022
0.5606662 0.393286
prism III 0.360449222 0.0110239 101.45604 0.183583 0.008785 118.301
0.0166139 0.014375
prism II 0.360465772 0.0006388 101.45668 0.183591 0.003765 118.317
0.0068688 0.009995
prism I 0.360466790 0.0 101.45045 0.183597 0.0 118.347
0.0 0.0
a zero total dipole moment concludes the present list. Table 1 also reports the
calculated thermodynamic properties of the aforementioned structures. As it is
seen there, the chair structure is characterized by the highest entropy of 132.51
cal/mol T. Entropies of cage VI and the open prism are larger than those of
the prism I structure. This implies that despite the fact that the latter is at the
global minimum at T=0 K, the energy ordering might change with raising the
temperature. In figure 5 we display a phase-like diagram of some water hexamer
structures. It is seen that prism I remains at the global minimum at T ¡ 130 K.
If T> 130 K, the ring structure becomes the lowest one by free energy. At room
temperature, cages I-IV compete with prism I. It is interesting that at T> 300 K
the open prism becomes more energetically favourable than prism I.
218
H-bonded pattern in water
Figure 1. Lower-lying structures of water hexamer. In all figures O-H (solid line),
H- (dashed), and “dangling” (dot-dashed) bonds.
219
E.Kryachko
Table 2. Rotational constants and total dipole moment of lower-lying water hex-
amer structures. Calculated rotational constants from [23(g)] are in parentheses.
Structure Rotational constants, GHz Dipole moment, D
chair 1.16607 1.16607 0.59509 0.0
cage VI 2.06059 1.08402 1.07861 3.4507
op. prism 1.57297 1.29319 1.07046 4.3841
prism IV 1.63253 1.28955 1.26493 2.8531
prism VI 1.63298 1.28948 1.26525 2.8512
prism V 1.63251 1.28955 1.26522 2.8523
cage V 2.11851 1.08603 1.02710 2.0095
cage IV 2.10894 1.09042 1.03060 2.0980
(2.1334) (1.1055) (1.0790)
cage III 2.13939 1.07922 1.01612 1.8585
(2.1336) (1.1021) (1.0755)
cage II 2.14024 1.07891 1.01597 1.8667
(2.1341) (1.1032) (1.0754)
cage I 2.13849 1.07943 1.01628 1.8524
(2.1332) (1.1027) (1.0747)
prism III 1.61272 1.32655 1.28996 2.9921
prism II 1.61462 1.32616 1.29057 2.9101
prism I 1.61452 1.32630 1.29033 2.9038
Table 3. Energy E, enthalpy H, entropy S, zero-point vibrational energy ZPVE,
and free energy of defect water hexamer. Prisms I and VI and chair hexamers are
chosen as the reference ones. ∆prismI ≡ ∆o,∆prismVI ≡ ∆p,∆chair ≡ ∆c. ∆xX in
kcal/mol, X = E, H, and G (at room T=298.15 K); ∆x S in cal/mol K, x = o, p, c.
E (hartree) H (hartree) S (cal/mol K) ZPVE (kcal/mol)
∆oE ∆oH ∆oS ∆oG
∆pE ∆pH ∆pS ∆pG
∆cE ∆cH ∆cS ∆cG
-456.3534556 -456.1773545 127.64111 100.24399
4.40 3.92 9.29 1.49
2.88 2.48 8.34 - 0.01
2.04 2.21 - 4.86 3.66
With regard to water octamer, it is well known that the cubic structure Ca
[23(a)] of D2d is the most stable one on the water octamer potential energy surface
computed at the HF/6-311G** level. The cubic structure of S4 symmetry occupies
the local minimum that lies 3.49 kcal/mol above the Ca structure. In addition,
there have been found another twenty five lower-lying octamer structures among
which the ring structure R8a is energetically higher than the Ca one by 12.91
kcal/mol. At room temperature, their free energy difference diminishes to 0.19
kcal/mol [23(a)].
220
H-bonded pattern in water
Figure 2. Five lowest cage structures of six molecules of water.
221
E.Kryachko
3.2. “Dangling” bond in water hexamer
Figure 3. Opened prism water hexamer.
A novel lower-energy local-mini-
mum structure of (H2 O)6 water cluster
is revealed on the water hexamer poten-
tial energy surface at the HF/6-311G**
level. It is shown in figure 6 and here-
after is named Defect I. Its total dipole
is equal to 2.47 D. It lies above prism
VI and chair water hexamers by 2.88
and 2.04 kcal/mol, respectively, and the
distances from the prism I structure
by 4.40 kcal/mol which reduces to 3.19
kcal/mol with taking ZPVE into acc-
count. The zero-point vibrational en-
ergy, enthalpy, free energy of Defect I
and their differences with respect to the
corresponding quantities for the prism and chair structures tabulated in [22(d)]
are listed in table 3. One readily figures out that at room temperature, the energy
of formation of Defect I is 1.49 kcal/mol with respect to that of prism I. It is
worth mentioning that Defect I and prism VI are almost isoenergetical at room
temperature (see also figure 7).
Figure 4. Cage VI cluster of six water
molecules.
Internal coordinates of Defect I are
presented in table 4. One sees the-
re that in Defect I, water molecule
H2H3O1 distances from the nearest-
neighbor water molecules with which
it forms a covalent or H-bond rather
different from the typical O-O separa-
tion of 2.86 Å inherent for the tetrahe-
dral pattern. To specify, R(O1 and O4)
= 2.93 Å, R(O1 and O5) = 3.08 Å,
and R(O1 and O15) = 2.97 Å. Due to
this, the water molecule has a fifth
nearest-neighbour which is settled on
the oxygen atom O10 and character-
ized by the distance R(O1 and O10) =
3.16 Å (see figure 6). The latter is less
than Rthr and thus, one might think
of these molecules as bonded to each
other by the so-called “dangling” bond.
One, therefore, concludes that this wa-
ter cluster with a “dangling” bond is
a five-folded “patch” that may appear
among four-folded ones in an H-bonded
222
H-bonded pattern in water
pattern of liquid water.
Table 4. Internal coordinates of defect water hexamer.
Interoxygen distance, Å
R(O1 − O4) R(O1 − O5) R(O1 −O10) R(O1 −O15)
R(O4 − O10) R(O4 −O14) R(O4 −O15)
R(O5 − O10) R(O5 −O14) R(O10 − O14)
2.932 3.075 3.162 2.969
2.842 2.824 2.897
2.953 2.869 4.120
H-bond length, Å
r(O1 −H9) r(O1 −H18) r(O4 −H3) r(O4 −H11)
r(O5 −H13) r(O10 −H8) r(O14 −H6) r(O15 −H7)
2.337 2.171 1.997 1.960
1.949 2.070 1.931 2.074
H-bond angle δH , deg
O1 −H3 −O4 O1 −H9 − O5 O1 −H18 − O15 O4 −H6 −O14
O4 −H7 −O15 O5 −H8 − O10 O10 −H11 − O4 O14 −H13 − O5
167.99 134.63 141.29 155.45
144.44 154.30 153.55 161.84
O-O-O bond angle, deg
O4 −O1 −O15 O10 − O1 − O15 O5 −O1 −O15 O14 − O4 −O15
O1 − O4 − O15 O10 − O5 − O14 O1 −O5 −O10
O10 − O5 − O14 O4 −O14 − O5 O1 −O15 −O4
62.75 43.89 87.60 73.37
59.57 86.70 93.11
86.70 63.41 57.67
Formation of a “dangling” bond promotes the appearance of nonlinear H-bonds
between O1, on the one hand, and O5 and O15, on the other one, with r (O1−H9)
= 2.34 Å, ∠O1−H9−O5 = 134.63o, r (O1−H18) = 2.17 Å, and ∠O1−H18−O15 =
141.29o. This is clearly seen in figure 6. It follows from table 4 that the “dangling”
bond causes distortion of the rest of an H-bonded pattern of Defect I water hexamer
that remains four-folded. For instance, R(O5 and O10) = 2.95 Å, r (O10 − H8) =
2.07 Å, ∠O5 − H8 −O10 = 154.30o, and R(O4 and O15) = 2.90 Å, r (O4 − H18) =
2.07 Å, ∠O4−H7−O15 = 144.44o. It should be noted that some O-O-O bond angles
are clustered around 60o. These are, in particular, the following: ∠O4−O1−O15 =
62.75o,∠O1−O4−O15 = 59.57o, and ∠O4−O14−O5 = 63.41o. One also sees from
table 4 that the lone-pair distribution of O1 loses its tetrahedrality characterized
by ∠O5 − O1 − O15 = 87.60o due to the five-fold coordination. We would like to
conclude this paragraph by noting that due to the “dangling” bond, the separation
between the oxygen atoms O1 and O14 considered as second-neighbours is 4.22 Å.
223
E.Kryachko
The assignment of harmonic vibrations of the Defect I “patch” is shown in
table 5. Harmonic frequencies computed for inter- and intra-molecular modes of the
Defect I structure are listed in the second column of this table. Its third and fourth
columns report the corresponding theoretical IR intensity and Raman activity.
First of all, before studying table 5, it should be mentioned that the theoretical
spectra of the chair and boat water hexamers [22(d)] do not have vibrations in the
range 4000-4200 cm−1. It implies that the hydrogen atoms in these structures are
solely of two sorts: the hydrogens involved in forming H-bond, and “free” hydrogens
participating in unbonded OH groups. On the contrary, the prism hexamers and
Defect I do have H-stretching vibrations in this region. The most intensive IR
band of Defect I is the librational one centered at 663.5 (IR intensity 564 km/mol,
Raman activity 0.5 Å
4
/amu) comparing with the most IR intensive ones for the
prism, chair, and boat hexamers that fall into the region of H-stretching vibrations.
The band at 663.5 cm−1 is assigned to the composed libration of the O4 − H6,
O5−H8, and O5−H9 bonds. Other IR intensive bands of Defect I are the following:
band 467.2 cm−1 (343.3, 2.2) associated with the composed librational vibration
of O1 − H3, O5 − H8, O5 − H9, and O15 − H18 bonds and others belong to the
H-stretching region. These are band-centered at 4001.96 cm−1 (511.8, 22.0) with
the O4−H6, O14−H13 stretching vibration character and the band at 4111.4 cm−1
(369.8, 21.3) assigned merely to O4−H7 stretching. Regarding the O-H stretching
vibrational modes with the frequencies νtheor
1 = 4141.9 cm−1 (17.7, 65.5; symmetric)
and νtheor
3 = 4237.6 cm−1 (57.4, 32.4; asymmetric) computed for the
Figure 5. Phase-like diagram of lower-lying water hexamer clusters.
224
H-bonded pattern in water
Table 5. Most intensive bands of Defect I water hexamer: vibrational frequen-
cies ν, cm−1, IR intensity (km/mol), Raman activity (Å
4
/amu), force constant
(mdyne/Å), and reduced mass (amu).
No. ν IR Raman Force Reduced
cm−1 intensity activity constant mass
Assignment
1 96.52 131.68 2.08 0.0068 1.2344
O15 −H17 translation
2 174.06 124.45 2.47 0.0251 1.4086
O14 −H16 translation
3 220.78 108.64 1.34 0.0329 1.1462
O10 −H12 translation
4 352.05 122.04 0.71 0.0761 1.0421
O1 −H2, O5 −H8 −H9, O10 −H12
libration
5 426.87 191.66 1.32 0.1163 1.0830
O1 −H2, O15 −H17 −H18 libration
6 450.08 103.90 0.47 0.1293 1.0830
O1 −H2 −H3, O5 −H9, O10 −H11
−H12, O15 −H18 libration
7 467.16 343.34 2.20 0.1357 1.0554
O1 −H3, O5 −H8 −H9, O15 −H18
libration
8 591.19 203.24 4.31 0.2162 1.0497
O1 −H3, O4 −H7 libration
9 663.51 564.12 0.47 0.2763 1.0651
O4 −H6, O5 −H8 −H9 libration
10 750.18 102.25 0.41 0.3462 1.0442
O4 −H7, O5 −H8, O10 −H11
libration
11 792.43 292.40 0.88 0.3940 1.0650
O4 −H6 −H7, O5 −H9, O14 −H13
libration
12 913.97 112.38 0.88 0.5155 1.0475
O1 −H3, O4 −H6 −H7 libration
13 1756.83 203.58 3.66 1.9633 1.0797
H2 −O1 −H3,H11 −O10 −H12,
H17 −O15 −H18 scissor
14 1822.21 107.83 3.87 2.1091 1.0781
H2 −O1 −H3,H8 −O5 −H9 scissor
15 3967.47 79.66 162.57 9.7897 1.0566
O4 −H6, O14 −H13 stretch
16 4001.96 511.76 22.01 9.9429 1.0537
O4 −H6, O4 −H7, O14 −H13
stretch
17 4016.36 167.01 25.95 10.0461 1.0570
O10 −H11 stretch
225
E.Kryachko
Table 5. Continued from the previous page.
18 4047.50 227.75 89.05 10.1860 1.0553
O1 −H3, O4 −H6, O10 −H11 stretch
19 4068.80 143.11 36.64 10.2569 1.0516
O5 −H8, O5 −H9 stretch
20 4085.39 211.26 48.75 10.3511 1.0526
O15 −H17, O15 −H18 stretch
21 4111.36 369.79 21.25 10.7142 1.0758
O4 −H7 stretch
22 4159.71 177.57 29.98 10.9754 1.0766
O5 −H9 stretch
23 4183.20 111.31 32.23 11.0601 1.0727
O1 −H2 stretch
24 4210.83 124.08 51.80 11.2187 1.0739
O10 −H12 stretch
25 4212.04 81.71 59.75 11.2060 1.0721
O14 −H16 stretch
26 4220.61 113.57 47.29 11.3126 1.0779
O15 −H17 stretch
HF/6-311 G** water monomer (for comments see [24]), one may divide the whole
stretching region of Defect I into three groupings. The first one spans the range
Figure 6. Pentacoordinated water hexamer cluster Defect I.
226
H-bonded pattern in water
Figure 7. Phase-like diagram of Defect I and some lower-lying water hexamers.
from 3967 to 4069 cm−1 and possesses the dominant character of stretching the
H-bonded hydrogen atoms. The band 3967.5 cm−1 (79.7; 162.6) describes the com-
posed symmetric stretching vibration of O4 −H6, O14 −H13 bonds and is, in fact,
the strongest Raman active one. The aforementioned band 4002.0 cm−1 corre-
sponds to asymmetric stretching vibration. Comparing with the stretching bands
of a single water molecule, the latter are both redshifted, considerably enhanced,
and become closer to each other by 60 cm−1. The second grouping of bands lies
in the interval from 4085 to 4180 cm−1 and is primarily contributed by nonlinear
or bent H-bonded hydrogens. The last one consists of bands from 4183 to 4221
cm−1. They are assigned to the stretching vibrations of “free” hydrogen atoms.
These bands are slightly blueshifted and mainly twice enhanced comparing with
the stretching mode ν3 of a water monomer. Regarding the intramolecular or scissor
modes of our defect hexamer structure, it has to be mentioned first that the har-
monic mode ν
(monomer)
2 of a water monomer calculated at the HF/6- 311G** level is
1750.3 cm−1. Its IR absorption and Raman activity constitute 79.2 km/mol and 6.4
Å
4
/amu, respectively. Two intra-molecular modes of Defect I are redshifted com-
paring with ν
(monomer)
2 and more pronounced. Their normal vibration assignment is
also shown. For instance, the first intramolecular mode of Defect I with frequency
1756.8 cm−1 describes the composed scissor vibrations of water molecules H2H3O1
and H11H12O10 bonded to each other via a “dangling” bond.
227
E.Kryachko
3.3. Five-fold coordinated water octamers
Figure 8 displays a pentacoordinated water octamer. Its distinction is that it
has formed 3 H-bonds and looks identical to the structure R6c found in [23(a)],
although a slight deviation in their properies is revealed [25]. Energy, enthalpy,
Figure 8. Pentacoordinated water octamer cluster Defect II.
zero-point vibrational energy and entropy calculated at the HF/6-311G** level
of the computational theory of the octamer are reported in table 6. Before going
further, one more word about the studied water clusters should be added. As
to the cages and Defect I, they serve as examples in lower-lying clusters. Water
molecule may form a first coordination shell with five water molecules in such
Table 6. Energy E, enthalpy H, entropy S, zero-point vibrational energy ZPVE,
and free energy of defect water octamer. Cubic octamer Ca is chosen as the
reference one. For other notations see caption of table 3.
Defect E (hartree) H (hartree) S (cal/mol K) ZPVE (kcal/mol)
∆caE ∆caH ∆caS ∆caG
Defect II -608.4765824 - 608.2403860 156.181 134.42923
12.291 10.802 17.905 5.47
228
H-bonded pattern in water
a way that the approaching fifth water molecule is bonded to the central water
molecule by a “dangling” bond. Defect II portrayed in figure 8 is referred to an
absolutely different type of pentacoordinated water clusters. It is seen there that
the oxygen atom O4 has three elongated and rather weak H-bonds with the oxygen
atoms O1,O5, and O11 separated from it by circa 3 Å (table 7). Despite the fact
that the angle ∠H6 − O5 − H7 = 107.13o remains unchanged comparing with
the water monomer. However, the lone-pair angular distribution suffers drastic
changes, which is revealed in the calculated values of the corresponding angles:
∠H3−O4−H9 = 69.19o, ∠H9−O4−H14 = 70.54o, and ∠H3−O4−O14 = 115.65o.
Its arrangement relative to the H6 − O4 − H7 plane is determined by the anlges
∠H3−O4−H7 = 88.91o, ∠H6−O4−H14 = 79.56o, and ∠H6−O4−H9 = 125.61o.
Table 7. Internal coordinates of defect water octamer.
Interoxygen distance, Å
R(O1 − O4) R(O1 − O10) R(O1 − O18) R(O1 − O21)
R(O4 − O5) R(O4 − O11) R(O4 − O19) R(O4 − O21)
R(O5 − O11) R(O5 − O18) R(O10 − O19) R(O11 −O19)
3.051 2.883 2.842 2.930
2.989 2.972 2.802 2.890
2.990 2.862 2.875 3.061
H-bond length, Å
r(O1 −H13) r(O1 −H24) r(O4 −H3) r(O4 −H9)
r(O4 −H14) r(O5 −H16) r(O10 −H17) r(O11 −H8)
r(O11 −H22) r(O18 −H2) r(O19 −H6) r(O21 −H7)
1.965 2.086 2.164 2.120
2.207 1.948 1.955 2.238
2.370 1.941 1.892 2.051
H-bond angle δH , deg
O1 −H3 − O4 O4 −H9 −O5 O5 −H8 − O11 O1 −H13 −O10
O4 −H14 − O10 O1 −H2 −O18 O5 −H16 −O18 O4 −H6 − O19
O10 −H17 − O19 O4 −H7 −O21 O11 −H22 −O19 O1 −H24 −O21
155.49 152.07 136.03 161.78
137.24 157.20 160.34 158.87
162.59 146.57 129.83 147.54
O-O-O bond angle, deg
O1 − O18 − O5 O4 −O5 − O18 O10 −O1 − O18 O11 −O5 −O18
O5 − O4 − O19 O1 −O10 −O19 O4 − O19 − O10 O11 −O4 −O19
O5 −O4 − O21 O10 −O1 − O21 O11 −O4 −O21
O18 −O1 − O21 O19 −O4 −O21
77.73 104.14 122.58 138.43
103.22 84.15 99.21 63.95
113.46 112.69 169.30
122.74 111.81
229
E.Kryachko
Being a Ca structure, Defect II possesses 12 H-bonds albeit 7 of which may
be considered relatively weak because their lengths exceed 2 Å. What is most
impressing in the H-bonded pattern of Defect II is that water molecule H14H15O11
is weakly bonded to its nearest neighbours. This is clearly seen in the fact that
the inwarding H-bonds, such as O11 −H8 and O11 −H22 have the lengths 2.24 and
2.37 Å, respectively. The outwarding H-bond O4 − H14 is also strongly elongated
to 2.21 Å. The angles ∠O5 − H8 − O11 = 136.03o, ∠O4 − H14 − O11 = 137.24o,
and ∠O11 − H22 − O19 = 129.83o keep, therefore, a very low profile. The angle
∠O11 − O4 − O19 = 63.95o shows, in particular, a loss of tetrahedrality in this
area of the pentacoordinated “patch”. It seems worth discussing right now the
distribution of oxygen-oxygen separations beyond the first coordination shell. They
are quite well clustered around 4.65 Å and take the values: R(O4−O10) = 4.32 Å,
R(O5−O19) = 4.54 Å, R(O4−O18) = 4.62 Å, R(O19−O21) = 4.71 Å, R(O10−O21)
= 4.84 Å, R(O5 −O21) = 4.92 Å, and R(O1 −O11) = 4.94 Å. The oxygen atom is
placed in a particularly privileged position because it stays very close to O5 and
O19, namely, by 3.58 and 3.86 Å, respectively.
The dipole moment of the Defect II “patch” is very low and equal to 0.87
D. Energetically, it is situated 12.30 kcal/mol above the Ca structure. At room
temperature, their difference in free energy is just 5.47 kcal/mol. Regarding the
spectrum of this “patch”, it is worth noting that the spectrum of Defect II possesses
rather strong IR intensive bands. Namely, its most IR intensive and Raman active
bands fall only in the region of stretching vibrations. This is the band νH2O
28 = 4113.9
cm−1 with IR intensity 453.6 km/mol attributed chiefly to the stretching of O1−H3
bond. The second one, νH2O
20 = 3978 cm−1, with Raman activity 142.27 Å
4
/amu
and IR intensity 429.7 km/mol, is assigned to the composed symmetric stretching
vibration of O1−H2 and O18−H16 bonds. From table 8 one can easily recognize the
grouping of bands in the region 4091- 4168 cm−1 corresponding to the stretching
vibrations of three O-H bonds which establish the five-fold coordination of the
H6H7O4 water molecule and of the other two directed to H14H15O11. Comparing
with the stretching modes of a water monomer, these bands are slightly redshifted,
which indicates their weakness. This grouping of bands borders another one falling
to 4205-4215 cm−1 and describing the stretching vibrations of unbonded or “free”
O-H groups.
Table 8 also lists the most intensive vibrations of fully deuterated Defect II
calculated at the HF/6-311G** level of computation. Its zero-point vibrational
energy is 87.961 kcal/mol and entropy – 178.571 cal/mol·K.
230
H-bonded pattern in water
Table 8. Most intensive bands of defect water octamer. For notations see caption
of table 5. Values for fully deuterated Defect II are given in parenthesis.
No. ν IR Raman Force Reduced
cm−1 intensity activity constant mass
Assignment
1 167.50 ( 139.68) 134.88 ( 66.82) 2.49 ( 0.13) 0.0217 1.3153 (2.4140)
O21 −H23 translation
2 186.88 ( 145.25) 188.76 ( 47.14) 0.82 ( 0.50) 0.0286 1.3893 (2.8709)
O18 −H20, O11 −H15 translation
3 454.54 ( 329.81) 247.97 (119.39) 1.45 ( 0.69) 0.1290 1.0594 (2.2083)
O19 −H22 libration
4 479.03 ( 347.03) 156.33 ( 94.76) 3.36 ( 1.69) 0.1426 1.0549 (2.1971)
O1 −H3, O19 −H22 libration
5 492.42 ( 357.49) 217.73 (108.48) 0.69 ( 0.39) 0.1513 1.0592 (2.2157)
O21 −H24, O19 −H22 libration
6 533.88 ( 387.10) 161.88 (114.83) 0.31 ( 0.43) 0.1781 1.0605 (2.1872)
O5 −H8, O11 −H14, O5 −H9 libration
7 546.94 ( 395.37) 170.08 ( 50.61) 3.40 ( 1.52) 0.1849 1.0492 (2.1872)
O4 −H7, O21 −H24 libration
8 601.84 ( 436.54) 202.77 (116.59) 1.35 ( 0.65) 0.2256 1.0571 (2.2097)
O5 −H9, O18 −H16 libration
9 654.55 ( 474.21) 134.04 ( 68.85) 0.87 ( 0.46) 0.2673 1.0591 (2.1829)
O5 −H9, O19 −H17 libration
10 668.36 ( 486.34) 332.08 (191.89) 1.49 ( 0.75) 0.2802 1.0646 (2.2347)
O18 −H16, O19 −H22 libration
11 693.47 ( 501.19) 250.72 (127.85) 0.93 ( 0.42) 0.2975 1.0501 (2.1782)
O19 −H17, O4 −H6 libration
12 757.18 ( 548.76) 149.08 ( 73.69) 1.94 ( 0.96) 0.3574 1.0582 (2.1919)
O4 −H6, O4 −H7 libration
13 798.45 ( 570.25) 381.95 (234.52) 0.13 ( 0.10) 0.3851 1.0488 (2.1742)
O1 −H2, O4 −H6, O10 −H13 libration
14 844.58 ( 615.41) 177.47 (112.25) 0.40 ( 0.13) 0.4484 1.0670 (2.2478)
O4 −H7, O1 −H2, O1 −H3,
O21 −H24 −H18 libration
15 908.64 ( 654.81) 128.66 ( 77.92) 0.64 ( 0.30) 0.5079 1.0441 (2.1547)
O4 −H6, O19 −H17 libration
16 1754.08 (1282.64) 132.62 ( 67.93) 6.41 ( 3.41) 1.9589 1.0806 (2.2559)
O11 −H14 −H15 scissor
17 1774.04 (1295.89) 116.20 ( 54.80) 5.05 ( 2.71) 1.9991 1.0781 (2.2477)
O21 −H23 −H24 scissor
18 1843.89 (1344.61) 188.18 (100.98) 1.93 ( 1.11) 2.1503 1.0735 (2.2360)
O1 −H2 −H3, O5 −H8 −H9 scissor
19 3927.49 (2842.71) 257.45 (111.19) 122.55 (74.23) 9.6031 1.0566 (2.1797)
O4 −H6 stretch
20 3978.39 (2880.00) 429.69 (252.81) 142.27 (77.02) 9.8550 1.0568 (2.1812)
O1 −H2, O18 −H16 stretch
21 4003.26 (2897.42) 438.73 (199.00) 20.23 (11.63) 9.9717 1.0561 (2.1801)
O10 −H13, O18 −H16, O19 −H17 stretch
22 4015.09 (2903.59) 114.94 ( 48.68) 36.68 (19.66) 10.0101 1.0539 (2.1756)
O1 −H2, O18 −H16, O19 −H17 stretch
23 4034.36 (2917.34) 345.32 (143.67) 38.65 (19.40) 10.1096 1.0542 (2.1738)
O10 −H13, O19 −H17 stretch
231
E.Kryachko
Table 8. Continuation from previous page.
24 4058.52 (2937.93) 61.32 ( 36.05) 96.31 (40.38) 10.2950 1.0608 (2.1743)
O21 −H24, O4 −H7 stretch
25 4085.48 (2954.27) 426.88 ( 35.75) 35.90 ( 8.48) 10.5052 1.0682 (2.1656)
O4 −H7, O21 −H24 stretch
26 4091.03 (2955.79) 41.88 ( 53.56) 21.64 (45.36) 10.3624 1.0509 (2.1632)
O11 −H14, O5 −H9 stretch
27 4094.86 (2985.00) 48.83 (233.61) 67.66 (21.11) 10.3814 1.0508 (2.2772
O11 −H14, O5 −H9 stretch
28 4113.90 (3005.70) 453.56 (233.57) 37.92 (19.01) 10.6611 1.0692 (2.2742)
O1 −H3 stretch
29 4161.77 (3046.49) 96.49 ( 53.20) 26.93 (15.75) 11.0057 1.0785 (2.2812)
O5 −H8, O5 −H9, O19 −H22 stretch
30 4168.43 (3049.50) 256.07 (169.94) 23.34 (10.82) 11.0101 1.0755 (2.2797)
O19 −H22 stretch
31 4205.02 (3072.61) 104.06 ( 88.09) 49.36 (23.54) 11.1776 1.0729 (2.2705)
O10 −H12 stretch
32 4208.77 (3074.79) 100.10 ( 85.73) 52.66 (24.84) 11.1935 1.0725 (2.2691)
O18 −H20 stretch
33 4213.47 (3082.78) 116.91 ( 76.78) 43.67 (20.41) 11.2567 1.0762 (2.2801)
O21 −H23, O21 −H24 stretch
34 4214.21 (3087.05) 110.76 ( 88.40) 47.58 (19.72) 11.2964 1.0796 (2.2878)
O11 −H15, O11 −H14 stretch
Hence, the ratio ZPVEH2O/ZPVED2O = 1.53 [27]. For the deuterium Defect II,
the band νD2O
20 = 2880.0 cm−1 becomes most IR and most Raman active, si-
multaneously being contrary to the protium Defect II. We should also mention
the behaviour of ν27 assigned to the coupled asymmetric stretching vibrations of
O11−H14 and O5−H9 bonds under isotopic substitution. For the protium Defect II
this band possesses IR intensity equal to 48.8 km/mol while it becomes five times
more pronounced than its deuterated isotopomer. Analyzing the second and sixth
columns of table 8 one finds that the calculated harmonic frequencies and reduced
masses of the protium and deuterium Defect II do not show the known isotopic re-
lationships connecting the ratio of frequencies of translational and bending modes
νH2O/νD2O with the square root of the ratio of the corresponding moments of iner-
tia or masses, respectively. This is perhaps the common situation with computing
harmonic vibrational frequencies [27], although, in our case with larger water clus-
ters this deviation appears more pronounced than with water dimer. From table 8
it follows that, first, for νH2O
1 = 167.5 cm−1, the ratio νH2O
1 /νD2O
1 = 1.20 whereas,
according to this relationship, it should be
√
20/18 = 1.05. Second, one directly
obtains further that νH2O
2 /νD2O
2 = 1.29 and
√
µH2O
2 /µD2O
2 = 1.44. Third, for the rest
of vibrations listed in table 8, the isotopic frequency ratios behave rather regularly
around 1.37-1.38 with the exception for the 13th and 15th modes when they are
1.40 and 1.39, respectively. The isotopic reduced mass ratio does not reveal such
a simple regularity, although it is largerly clustered near 1.44-1.45. Altogether,
this isotopic analysis emphasizes a very anharmonic picture of the total potential
energy surface of water clusters.
232
H-bonded pattern in water
4. Summary
The fourteen different structures in the interval of 1.7 kcal/mol represent an
unprecedentedly wide range of conformational excursions for water hexamer clus-
ter. They illustrate how rich the picture of the total potential energy surface of
liquid water might be.
The present work also provides the first ab initio demonstration of the penta-
coordinated water hexamer structure. This structure is not, in fact, a defective one
in the common sense of defects in the H-bonded pattern that violates the Bernal-
Fowler-Pauling rules nor those structures that involve a bifurcated H-bond. It ac-
tually represents a novel structure of H-bonds where the approaching fifth water
molecule forms a “dangling” bond with the central water molecule generating in
such a way a pentacoordinated “patch” of higher density. This “patch”, being
incorporated into an H-bonded pattern of liquid water, on the one hand, partly
contributes to nontetrahedral configurations and to the known blurred maximum
of the O-O-O bond angle distribution function in the interval 60o − 80o, in par-
ticular. On the other hand, it contributes to tetrahedral configurations as well.
Notwithstanding that such hexamer and octamer five-fold coordinated “patches”
occupy lower- lying local energetic minima on the total potential energy surfaces,
they become energetically accessible at room temperature.
Acknowledgements
The author thanks Joel Bowman, Keiji Morokuma, and Jamal Musaev for many
helpful discussions and hospitality. GAUSSIAN computing resources were provided
by the Cherry L. Emerson Center for Scientific Computation at Emory Univer-
sity in Atlanta. The author also acknowledges stimulating discussions with En-
rico Clementi, Gina Corongiu, Jens Peder Dahl, Ludwig Hofacker, Yves Marechal,
Francesco Scortino, Georg Zundel, and Sotiris Xantheas. The author is grateful to
Ihor Stasyuk for the inspiring scientific atmosphere and many useful discussions
during his visits to Lviv.
References
1. (a)Eisenberg D., KauzmannW. The structure and properties of water. Oxford, Claren-
don, 1969; (b)F. Franks (Ed.) Water: a comprehensive treatise. New-York, Plenum,
1973. Vols.1-7, and References therein.
2. For Stasyuk’s contribution to the hydrogen bond theory consult with: (a)Stasyuk I.
V., Levitsky R. R. On elementary excitations in ferroelectrics with hydrogen bond.
//Ukr. Fiz. Zh. 1969, vol 14, No 7, p.1097-1105; (b)Stasyuk I. V., Levitsky R. R.
Coupled vibrations of a proton-ion system in ferroelectrics with hydrogen bonds of
KH2PO4 type. //Ibid., 1970, vol 15, No 3, p.460-469; (c)Stasyuk I. V., Levitsky R.
R. The role of proton-phonon interaction in the phase transition of ferroelectrics with
hydrogen bonds. //Phys. Stat.Sol.(b), 1970, vol 39, No 1, p.K35-K38; (d)Stasyuk I.
V. Proton-phonon interaction in ferroelectrics with hydrogen bonds (strong coupling
233
E.Kryachko
approximation). //Teor. Mat. Fiz., 1971, vol 9, No 3, p.431-439; (e)Stasyuk I. V.,
Levitsky R. R. Dynamical theory of NH2H2PO4-type antiferroelectrics with hydrogen
bonds. //Izv. Acad. Nauk SSSR, Ser. Fiz., 1971, vol 35, No 9, p.1775-1778; (f)Stasyuk
I. V., Ivankiv A. L. Reduced set model for explanation of the molecular complexes with
chains of hydrogen bonds. //Ukr. Fiz. Zh., 1991, vol 36, No 6, p.817-823; g)Stasyuk I.
V., Stetsiv R. Y. Electronic states and optical effects in KH2PO4 type crystals with
hydrogen bonds. //Izv. Acad. Nauk SSSR, Ser. Fiz., 1991, vol 55, No 3, p.522-525;
(h)Stasyuk I. V., Ivankiv A. L. Thermodynamics of the molecular complexes with
chains of hydrogen bonds. //Mod. Phys. Lett. B., 1992, vol 6, No 2, p.85-91; and
References therein.
3. Bernal J. D., Fowler R. H. A theory of water and ionic solution, with particular
reference to hydrogen and hydroxyl ions. //J. Chem. Phys., 1933, vol 1, No 8, p.
515-548; Pauling, L. The structure and entropy of ice and other crystals with some
randomness of atomic arrangement. //J. Am. Chem. Soc., 1933, vol 57, No 7, p.
2680-2684.
4. (a)Rahman A., Stillinger F. H. Molecular dynamics study of liquid water. //J. Chem.
Phys., 1971, vol. 55, No 7, p. 3336-3359; (b)Stillinger F. H., Rahman A. Improved
simulation of liquid water by molecular dynamics. //Ibid., 1974, vol. 60, No 4, p.
1545-1557.
5. (a)Geiger A., Stillinger F. H., Rahman A. Aspects of the percolation process for
hydrogen-bond networks in water. //J. Chem. Phys., 1979, vol. 70, No 9, p. 4185-
4193; (b)Mezei M., Beveridge D. L. Theoretical studies of hydrogen bonding in liquid
water and dilute aqueous solutions. //Ibid., 1981, vol. 74, No 1, p. 622-632.
6. (a)Stanley H. E., Teixeira J. Interpretation of the unusual behavior of H2 O and D2
O at low temperatures: tests of a percolation model. //J. Chem. Phys., 1980, vol.
73, No 7, p. 3404-3422; (b)Stanley H. E., Teixeira J., Geiger A., Blumberg R. L.
Interpretation of the unusual behavior of H2 O and D2 O at low temperature: are
concepts of percolation relevant to the “puzzle of liquid water” ? //Physica, 1981,
vol. A 106, No 1, p. 260-277; (c)Geiger A., Stanley H. E. Low-density “patches” in
hydrogen-bond network of liquid water: evidence from molecular-dynamics computer
simulations. //Phys. Rev. Lett., 1982, vol. 49, No 24, p. 1749-1755; (d)Geiger A.,
Stanley H. E. Tests of universality of percolation exponents for a three-dimensional
continuum system of interacting waterlike particles. //Ibid., 1982, vol. 49, No 26, p.
1895-1898; (e)Blumberg R. L., Stanley H. E., Geiger A., Mausbach P. Connectivity of
hydrogen bonds in liquid water. //J. Chem. Phys., 1984, vol. 80, No 10, p. 5230-5241;
(f)Geiger A., Mausbach P. Molecular dynamics simulation studies of the hydrogen
bond network in water. In J. C. Dore and J. Teixeira (Eds.), Hydrogen-bonded liquids,
Dordrecht, Kluwer, 1991. pp 171-183.
7. (a)Luzar A., Chandler D. Structure and hydrogen bond dynamics of water-dimethyl
sulfoxide mixtures by computer simulations. //J. Chem. Phys., 1993, vol. 98, No 10, p.
8160-8173; Effect of environment on hydrogen bond dynamics in liquid water. //Phys.
Rev. Lett., 1996, vol. 76, No 6, p. 928-931; (b)Padró J. A., Mart́i J., Guàrdia E.
Molecular dynamics simulation of liquid water at 523K. //J. Phys.: Condens. Matter,
1994, vol. 6, No 12, p. 2283-2290; (c)Mart́i J., Padró J. A., Guàrdia E. Molecular
dynamics simulation of liquid water along the coexistence curve: hydrogen bonds and
vibrational spectra. //J. Chem. Phys., 1996, vol. 105, No 2, p. 639-649.
8. (a)Narten A. H., Danford M. D., Levy H. A. X-ray diffraction study of liquid water
234
H-bonded pattern in water
in the temperature range 4-200o C. //Disc. Faraday Soc., 1967, vol. 43, p. 97-107;
(b)Narten A. H., Levy H. A. Observed diffraction pattern and proposed models of
liquid water. //Science, 1969, vol. 165, No 3892, p. 447-454; (c)Soper A. K., Phillips
M. G. A new determination of the structure of water at 25o C. //Chem. Phys., 1986,
vol. 107, No 1, p. 47-60; (d)Narten A. H., Levy H. A. Atom-pair distribution function
of liquid water at 25o C from neutron diffraction. //Science, 1982, vol. 217, No 4564, p.
1033-1035; (e)Morgan J., Warren B. E. X-ray analysis of the structure of water. //J.
Chem. Phys., 1938, vol. 6, No 9, p. 666-673. See also: Cho C. H., Singh S., Robinson
G. W. An explanation of the density maximum in water. //Phys. Rev. Lett., 1996,
vol. 76, No 10, p. 1651-1654.
9. Giguére P. A. Bifurcated hydrogen bonds in water. //J. Raman Spectrosc., 1984, vol.
15, No 5, p. 354-359; The bifurcated hydrogen-bond model of water and amorphous
ice. //J. Chem. Phys., 1987, vol. 87, No 8, p. 4835-4839.
10. (a)Walrafen G. E., Hokmabadi M. S., Yang W.-H., Chu Y., Monosmith W. B.
Collision-induced Raman scattering from water and aqueous solutions. //J. Phys.
Chem., 1989, vol. 93, No 8, p. 2909-2917; (b)Walrafen G. E., Hokmabadi M. S., Yang
W.-H. Raman investigation of the temperature dependence of the bending ν2 and com-
bination ν2 + νL bends from liquid water. //Ibid., 1988, vol. 92, No 9, p. 2433-2438;
(c)Walrafen G. E. Raman spectrum of water: transverse and longitudinal acoustic
modes below ≈ 300cm−1 and optic modes above ≈ 300cm−1. //Ibid., 1990, vol. 94,
No 6, p. 2237-2239.
11. (a)Bjerrum N. Structure and properties of ice. //K. Danske Vid. Selsk. Mat.-Fys.
Medd., 1951, vol. 27, No 1, p. 3-56; Structure and properties of ice. //Science, 1952,
vol. 115, No 2989, p. 385-390; (b)Originally from the German word “leer” that means
“empty”; (c)Originally from the German word “doppelt” that means “double”.
12. (a)Dunitz J. D. Nature of orientational defects in ice. //Nature, 1963, vol. 197, No
4870, p. 860-862; (b)Cohan N. V., Cotti M., Iribarne J. V., Weissmann M. Electrostatic
energies in ice and the formation of defects. //Trans. Faraday Soc., 1962, vol. 58, No
471, p. 490-498; (c)Eisenberg D., Coulson C. A. Energy of formation of D-defects in
ice. //Nature, 1963, vol. 199, No 4891, p. 368-369; (d)Kavanau J. L. Structure and
function in biological membranes. San Francisco, Holden-Day, 1965. Vol. I, p. 175ff;
(e)Newton M. D. Small water clusters as theoretical models for structural and kinetic
properties of ice. //J. Phys. Chem., 1983, vol. 87, No 21, p. 4288-4292; (f)Newton M.
D., Jeffrey G. A., Takagi S. Application of ab initio molecular orbital calculations to
the structural moieties of carbohydrates. 5. The geometry of the hydrogen bonds. //J.
Am. Chem. Soc., 1979, vol. 101, No 18, p. 1997-2002; (g)Jeffrey J. A., Saenger W.
Hydrogen bonding in biological structures. Berlin, Springer, 1991. p. 20ff; (h)Head-
Gordon M., Head-Gordon T. Analytic MP2 frequencies without fifth-order storage.
Theory and application to bifurcated hydrogen bonds in the water hexamer. //Chem.
Phys. Lett., 1994, vol. 220, Nos 1,2, p. 122-128.
13. (a)Kryachko E. S. The cooperative model for orientational defects in ice: continuum
approximation. //Chem. Phys. Lett., 1987, vol. 141, No 2, p. 346-349; Collective model
of orientational defect in ice within the continuum approach. //Solid State Phys.
(USSR), 1987, vol. 29, No 2, p. 345-350; (b)Yanovitskii O. E., Kryachko E. S. Model
for orientational defects in quasi-one-dimensional ice crystals. //Phys. Stat. Sol. (b),
1988, vol. 147, No 1, p. 69-81; (c)Kryachko E. S. Recent developments in solitonic
model of proton transfer in quasi-one-dimensional infinite hydrogen-bonded systems.
235
E.Kryachko
In A. Müller, H. Ratajczak, W. Junge, and E. Diemann (Eds.), Electron and proton
transfer in chemistry and biology. Amsterdam, Elsevier, 1992. pp. 363-385.
14. Devlin J. P. Vibrational spectra and point defect activities of icy solids and gas phase
clusters. //Int. Rev. Phys. Chem., 1990, vol. 9, No 1, p. 29-65; Fisher M., Devlin J.
P. Defect activity in amorphous ice from isotopic exchange data: insight into the glass
transition. //J. Phys. Chem., 1995, vol. 99, No 29, p. 11584-11590.
15. Prielmeier F. X., Lang E. W., Lüdemann H. D., Speedy R. J. Diffusion in supercooled
water to 300 MPa. //Phys. Rev. Lett., 1987, vol. 59, No 10, p. 1128-1131.
16. Geiger A., Mausbach P., Schnitker J. Computer simulation study of the hydrogen-
bond network in metastable water. In G. W. Neilson and J. E. Enderby (Eds.), Water
and aqueous solutions. Bristol, Adam Hilger, 1986; pp. 15-30.
17. (a)Sciortino F., Geiger A., Stanley H. E. Network defects and molecular mobility in
liquid water. //J. Chem. Phys., 1992, vol. 96, No 5, p. 3857-3865; (b)Sciortino F.,
Geiger A., Stanley H. E. Isochoric differential scattering functions in liquid water:
the fifth neighbor as a network defect. //Phys. Rev. Lett., 1990, vol. 65, No 27, p.
3452-3455.
18. Head-Gordon T., Stillinger F. H. An orientational perturbation theory for pure liquid
water. //J. Chem. Phys., 1993, vol. 98, No 4, p. 3313-3327. See Figs. 5 and 20 in
particular.
19. (a)Jedlovszky R., Bakó I., Pálinkás G., Radnai T., Soper A. K. Investigation of the
uniqueness of the reverse Monte Carlo method: studies on liquid water. //J. Chem.
Phys., 1996, vol. 105, No 1, p. 245-254; (b)Bruni F., Ricci M. A., Soper A. K. Unpre-
dicted density dependence of hydrogen bonding in water found by neutron diffraction.
//Phys. Rev., 1996, vol. B 54, No 17, p. 11876-11879.
20. GAUSSIAN 94, Revision B.3, M. J. Frisch, G. W. Trucks, H. B. Schlegel, P. M. W.
Gill, B. G. Johnson, M. A. Robb, J. R. Cheeseman, T. Keith, G. A. Petersson, J.
A. Montgomery, K. Raghavachari, M. A. Al-Laham, V. G. Zakrzewski, J. V. Ortiz,
J. B. Foresman, C. Y. Peng, P. Y. Ayala, W. Chen, M. W. Wong, J. L. Andres, E.
S. Replogle, R. Gomperts, R. L. Martin, D. J. Fox, J. S. Binkley, D. J. Defrees, J.
Baker, J. P. Stewart, M. Head-Gordon, C. Gonzalez, and J. A. Pople, Gaussian, Inc.,
Pittsburgh, PA, 1995.
21. (a)Krishnan R., Binkley J. S., Seeger R., Pople J. A. Self-consistent molecular orbital
methods. XX. A basis set for correlated wave functions. //J. Chem. Phys., 1980, vol.
72, No 1, p. 650-654; (b)Frisch M. J., Pople J. A., Binkley J. S. Self-consistent molecu-
lar orbital methods 25. Supplementary functions for Gaussian basis sets. //Ibid., 1984,
vol. 80, No 7, p. 3265-3269.
22. (a)Xantheas S. S., Dunning T. T., Jr. Ab initio studies of cyclic water clusters (H2
O)n, n=1-6. I. Optimal structures and vibrational spectra. //J. Chem. Phys., 1993,
vol. 99, No 11, p. 8774-8792; (b)Xantheas S. S. Ab initio studies of cyclic water clusters
(H2 O)n, n=1-6. II. Analysis of many-body interactions. //Ibid., 1994, vol. 100, No
10, p. 7523-7534; (c)Tsai C. J., Jordan K. D. Theoretical study of the (H2 O)6 cluster.
//Chem. Phys. Lett., 1993, vol. 213, Nos 1, 2, p. 181-188; (d)Krishnan P. N., Jensen J.
O., Burke L. A. Theoretical studies of water clusters. II. Hexamer. //Ibid., 1994, vol.
217, No 3, p. 311-318; (e)Estrin D. A., Paglieri L., Corongiu G., Clementi E. Small
clusters of water molecules using density functional theory. //J. Phys. Chem., 1996,
vol. 100, No 21, p. 8701-8711.
23. (a)Jensen J. O., Krishnan P. N., Burke L. A. Theoretical study of water clusters:
236
H-bonded pattern in water
octamer. //Chem. Phys. Lett., 1995, vol. 246, Nos 1, 2, p. 13-19; (b)Kim J., Mhin
B. J., Lee S. J., Kim K. S. Entropy-driven structure of the water octamer. //Ibid.,
1994, vol. 219, Nos 3, 4, p. 243-246; (c)Knochenmuss, R., Leutwyler S. Structure and
vibrational spectra of water clusters in the self-consistent-field approximation. //J.
Chem. Phys., 1992, vol. 96, No 7, p. 5233-5244; (d)Kim K., Jordan K. D., Zwier T. S.
Low-energy structures and vibrational frequencies of the water hexamer: comparison
with benzene-(H2 O)6. //J. Am. Chem. Soc., 1994, vol. 116, No 25, p. 11568; (e)Liti K.,
Brown M. G., Carter C., Saykally R. J., Gregory J. K., Clary D. C. Characterization
of a cage form of the water hexamer. //Nature, 1996, vol. 381, No 6582, p. 501-
503; (f)Gregory J. K., Clary D. C. Structure of water clusters. The contribution of
many-body forces, monomer relaxation, and vibrational zero-point energy. //J. Phys.
Chem., 1996, vol. 100, No 46, p. 18014-18022; (g)Liu, K., Brown M. G., Saykally R.
J. Terahertz laser vibration-rotation tunneling spectroscopy and dipole moment of a
cage form of the water hexamer. //Ibid., 1997, vol. A 101, No 27, p. 8995-9010.
24. (a)Mills I. M. Harmonic and anharmonic force field calculations. In R. N. Dixon
(Ed.), Theoretical chemistry. London, Chemical Society, 1974. Vol. 1-Quantum Chem-
istry, p. 110-159; (b)Honegger E., Leutwyler S. Intermolecular vibrations of small
water clusters. //J. Chem. Phys., 1988, vol. 88, No 4, p. 2582-2595, Table II and
Refs. therein. Experimental harmonic frequencies of water molecule are the follow-
ing: νexpt1 = 3832 cm−1, νexpt2 = 1649 cm−1, and νexpt3 = 3942 cm−1; (c)νtheor2 =
1750.30 cm−1 at the HF/6-311G** level; (d)Scaling factors fi = νtheori /νexpti , i =
1, 2, 3 are equal to 1.0809, 1.0614, 1.0750, respectively. The average scaling fac-
tor < f >= (f1 + f2 + f3)/3 = 1.0724; (e)The scaled frequencies νsca
i =
νtheori / < f > (with the relative error, δ = (νsca
i − νexpti )/νexpti ,%) are 3862.17
cm−1(+0.79%), 1632.09cm−1(−1.03%), 3951.43cm−1(+0.21%).
25. The relative properities of Defect II with respect to the R6c structure are: ∆E = 2
·10−4 kcal/mol, ∆H = - 4 ·10−4 kcal/mol, and ∆S = - 21.74 cal/mol·K.
26. For instance, the frequencies ν and reduced masses µ of water isotopomers H2O and
D2O calculated via STO-3G basis set are the following: ν
H2O(D2O)
1 = 4142.29 ( 2992.49
) cm−1, µ
H2O(D2O)
1 = 1.0491 ( 2.1747 ) amu; ν
H2O(D2O)
2 = 2169.80 ( 1584.65 ) cm−1,
µ
H2O(D2O)
2 = 1.0785 ( 2.2429 ) amu; and ν
H2O(D2O)
3 = 4393.38 ( 3212.88 ) cm−1,
µ
H2O(D2O)
3 = 1.0774 ( 2.2696 ) amu. Further, ZPVEH2O = 15.30 kcal/mol, ZPVED2O
= 9.94 kcal/mol, and their ratio ZPVEH2O/ZPVED2O = 1.54. Also, νH2O
1 /νD2O
1 =
1.38, νH2O
2 /νD2O
2 = νH2O
3 /νD2O
3 = 1.37, and
√
µH2O
1 /µD2O
1 =
√
µH2O
2 /µD2O
2 = 1.44,
√
µH2O
3 /µD2O
3 = 1.45.
27. We analyze the ratio νH2O/νD2O for the harmonic vibrational frequencies of water
dimer calculated in [28] at the HF/6-31G* and MP2 levels. Following Tables 1 and 2
of [28], one easily derives that this ratio spans the range 1.16-1.18 for all listed modes.
28. Scheiner S., C̆uma M. Relative stability of hydrogen and deuterium bonds. //J. Am.
Chem. Soc., 1996, vol. 118, No 6, p. 1511-1521.
237
E.Kryachko
Ab initio гексамери і октамери води: знаряддя до
вивчення водневозв’язаних кластерів у рідкій воді
Є.Крячко 1,2,3
1 Інститут теоретичної фізики ім. М.М.Боголюбова,
252143 м. Київ-143, вул. Метрологічна, 14б
2 Центр наукових обчислень Черрі Л. Емерсона і Відділення хімії
Університету Еморі, Атланта, GA 30322, США
3 Університет Джона Хопкінса, Відділення хімії,
Балтімор, MD 21218, США
Отримано 18 березня 1998 р.
Чотирнадцять різних структур гексамера води, які знайдені методом
ab initio в базисі 6-311G** в інтервалі 1.7 kcal/mol вище глобально-
го мінімуму, є безпрецедентним прикладом високої конформаційної
пластичності рідкої води. Дана робота також вперше демонструє іс-
нування пентакоординаційних кластерів води на рівні прецизійних ab
initio розрахунків.
Ключові слова: рідка вода, H-зв’язаний комплекс, орієнтаційний
дефект, водний кластер, “гойдальний” зв’язок, ab initio HF 6-311∗∗
обчислення
PACS: 61.20.Ja, 61.25.Em, 61.20.Gy, 62.30.+d, 63.20.Pw, 63.90.+t,
64.70.Ja, 65.50.+m, 64.30.+t
238
|