Efficient mechanism of DNA repair stabilizes genome of Arabidopsis thaliana from the Chernobyl zone
Tolerance to radiomimetics and heavy metals has been investigated in Arabidopsis thaliana plants collected in the Chernobyl zone. Decrease of root growth and DNA damage level of a single cell have been evaluated. Tolerance of A. thaliana from the zone to the growth on genotoxic medium has been rev...
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irk-123456789-1265642017-11-27T03:02:54Z Efficient mechanism of DNA repair stabilizes genome of Arabidopsis thaliana from the Chernobyl zone Shevchenko, G.V. Talalaiev, O.S. Біологія Tolerance to radiomimetics and heavy metals has been investigated in Arabidopsis thaliana plants collected in the Chernobyl zone. Decrease of root growth and DNA damage level of a single cell have been evaluated. Tolerance of A. thaliana from the zone to the growth on genotoxic medium has been revealed. It is noted that certain Arabidopsis plants recover genomic DNA faster than control ones collected outside of the zone. Screening revealed plant lines expressing various levels of tolerance to genotoxins. Досліджено стійкість проростків Arabidopsis thaliana із зони Чорнобильської АЕС до дії мутагенів (радіоміметиків і важких металів). Проаналізовано швидкість росту коренів і ступінь пошкоджень ДНК окремих клітин рослин. Виявлено стійкість росту A. thaliana із зони на генотоксичному середовищі і встановлено, що деякі рослини із зони ЧАЕС відновлюють свій геном швидше, ніж контрольні, зібрані поза зоною. За результатами скринінгу визначено рослини різного ступеня чутливості до дії генотоксинів. Исследована устойчивость проростков Arabidopsis thaliana из зоны Чернобыльской АЭС к действию мутагенов (радиомиметиков и тяжелых металлов). Проанализированы скорость роста корней и степень повреждения ДНК единичной клетки растений. Обнаружена устойчивость роста A. thaliana из зоны на генотоксичных средах и установлено, что некоторые растения из зоны ЧАЭС восстанавливают свой геном быстрее, чем контрольные, собранные вне зоны. В результате скрининга определены растения различной степени толерантности к воздействию генотоксинов. 2017 Article Efficient mechanism of DNA repair stabilizes genome of Arabidopsis thaliana from the Chernobyl zone / G.V. Shevchenko, O.S. Talalaiev // Доповіді Національної академії наук України. — 2017. — № 4. — С. 84-90. — Бібліогр.: 14 назв. — англ. 1025-6415 DOI: doi.org/10.15407/dopovidi2017.04.084 http://dspace.nbuv.gov.ua/handle/123456789/126564 577.215:582.683.2:621.311.25 en Доповіді НАН України Видавничий дім "Академперіодика" НАН України |
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Біологія Біологія Shevchenko, G.V. Talalaiev, O.S. Efficient mechanism of DNA repair stabilizes genome of Arabidopsis thaliana from the Chernobyl zone Доповіді НАН України |
description |
Tolerance to radiomimetics and heavy metals has been investigated in Arabidopsis thaliana plants collected in the
Chernobyl zone. Decrease of root growth and DNA damage level of a single cell have been evaluated. Tolerance of
A. thaliana from the zone to the growth on genotoxic medium has been revealed. It is noted that certain Arabidopsis
plants recover genomic DNA faster than control ones collected outside of the zone. Screening revealed plant lines
expressing various levels of tolerance to genotoxins. |
format |
Article |
author |
Shevchenko, G.V. Talalaiev, O.S. |
author_facet |
Shevchenko, G.V. Talalaiev, O.S. |
author_sort |
Shevchenko, G.V. |
title |
Efficient mechanism of DNA repair stabilizes genome of Arabidopsis thaliana from the Chernobyl zone |
title_short |
Efficient mechanism of DNA repair stabilizes genome of Arabidopsis thaliana from the Chernobyl zone |
title_full |
Efficient mechanism of DNA repair stabilizes genome of Arabidopsis thaliana from the Chernobyl zone |
title_fullStr |
Efficient mechanism of DNA repair stabilizes genome of Arabidopsis thaliana from the Chernobyl zone |
title_full_unstemmed |
Efficient mechanism of DNA repair stabilizes genome of Arabidopsis thaliana from the Chernobyl zone |
title_sort |
efficient mechanism of dna repair stabilizes genome of arabidopsis thaliana from the chernobyl zone |
publisher |
Видавничий дім "Академперіодика" НАН України |
publishDate |
2017 |
topic_facet |
Біологія |
url |
http://dspace.nbuv.gov.ua/handle/123456789/126564 |
citation_txt |
Efficient mechanism of DNA repair stabilizes genome of Arabidopsis thaliana from the Chernobyl zone / G.V. Shevchenko, O.S. Talalaiev // Доповіді Національної академії наук України. — 2017. — № 4. — С. 84-90. — Бібліогр.: 14 назв. — англ. |
series |
Доповіді НАН України |
work_keys_str_mv |
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first_indexed |
2025-07-09T05:16:22Z |
last_indexed |
2025-07-09T05:16:22Z |
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fulltext |
ISSN 1025-6415. Dopov. Nac. acad. nauk Ukr. 2017. № 484
ОПОВІДІ
НАЦІОНАЛЬНОЇ
АКАДЕМІЇ НАУК
УКРАЇНИ
БІОЛОГІЯ
30 years have passed since the explosion at the Chernobyl Nuclear Power Plant in 1986, and to-
day, despite of heavy affection of radiation, flora is abundant even in the most contaminated sites
of the Exclusion zone. This phenomenon proves plant adaptation to life in the chronic radiation
environment and on soils polluted by heavy metals. Unfortunately, due to technological catas-
trophes and devastating economics, there is a continuous contamination by heavy metals and
radiation throughout the world, which affects animals and plants and threatens human health.
At the same time, despite its notoriety, the Chernobyl area along with other anthropogenically
contaminated places could be considered as the unique area allowing the investigation of genetic
changes in organisms after a long-time impact of genotoxins. Such anthropogenically polluted
areas provide scientific challenges to researches, and the outcome of the investigations will con-
tribute significantly to the biotechnology of plant stress tolerance, soil remediation, and human
health protection.
Since plants cannot avoid environmental influences, their active vegetation in the Chernobyl
zone evidences the application of extremely efficient mechanisms for minimizing harmful effects.
As is known, radiation and heavy metals trigger a wide range of physiological and biochemical
alterations causing DNA single- and double-strand breaks, and this results in the genome instabil-
ity with potentially lethal consequences for the whole organism. During the first decade after the
Chernobyl disaster (1986—1992), several studies have been performed to analyze plant genome
© G.V. Shevchenko, O.S. Talalaiev, 2017
doi: https://doi.org/10.15407/dopovidi2017.04.084
UDC 577.215:582.683.2:621.311.25
G.V. Shevchenko, O.S. Talalaiev
M.G. Kholodny Institute of Botany of the NAS of Ukraine, Kiev
E-mail: g_shevchenko@botany.kiev.ua
Efficient mechanism of DNA repair stabilizes genome
of Arabidopsis thaliana from the Chernobyl zone
Presented by Corresponding Member of the NAS of Ukraine E.L. Kordyum
Tolerance to radiomimetics and heavy metals has been investigated in Arabidopsis thaliana plants collected in the
Chernobyl zone. Decrease of root growth and DNA damage level of a single cell have been evaluated. Tolerance of
A. thaliana from the zone to the growth on genotoxic medium has been revealed. It is noted that certain Arabidopsis
plants recover genomic DNA faster than control ones collected outside of the zone. Screening revealed plant lines
expressing various levels of tolerance to genotoxins.
Keywords: DNA damage and repair, Arabidopsis thaliana roots, single cell DNA gel electrophoresis, Chernobyl.
85ISSN 1025-6415. Допов. Нац. акад. наук Укр. 2017. № 4
Efficient mechanism of DNA repair stabilizes genome of Arabidopsis thaliana from the Chernobyl zone
changes in the Chernobyl zone [1, 2]. Along with chromosome aberrations in rye and wheat [3,
4] they revealed the increased occurrence of DNA single-strand breaks [1] and pronounced dose-
dependent genome destabilization [2].
Studies of the frequency of somatic intrachromosomal homologous recombination events in
Arabidopsis plants [2, 5] have shown its tendency to return to the control level during the sub-
sequent years after the explosion [5], evidencing in this way that changes in plant genomes have
important roles in the ongoing process of plant adaptation after a short period of radiation impact.
Nevertherless, a lot of questions still remain about molecular mechanisms of genome stability and
how it is preserved over a longer period. Therefore, further studies are clearly needed to predict
the long-term impact of radioactive contaminations on plants.
In connection with the above, we find it reasonable to check the adaptation ability of Arabi-
dopsis plants from Chernobyl and to analyze to what extent the plant genome could be damaged
and how fast it can be repaired. By this research, we would like to attract a wide attention of
scientists and the social community to such an “open air laboratory” as the Chernobyl area and to
promote investigations of the contamination impact on plants.
Up-regulation of DNA repair is one of the possible mechanisms of adaptation. By this re-
search, we will investigate how efficiently this mechanism is functioning in the areas contami-
nated by radiation and heavy metals for thirty years. In particular, we investigated the ability of
Arabidopsis to grow on a genotoxic medium (heavy metals and radiomimetics) and, in parallel,
evaluated the kinetics of Arabidopsis genome recovery. For the latter task, we applied “comet as-
say”, a versatile sensitive method for the evaluation of DNA damages and DNA repair capacity at
a single-cell level [6]. The above method is used widely for checking the plant genome integrity
after the influence of various toxins [7]. Our investigation has shown that Arabidopsis plants from
Chernobyl tolerate the growth on a contaminated medium, and the genome of such plants is char-
acterized by efficient repair capacity.
Materials and methods. Seed collection and growth conditions. Native Arabidopsis plants
have been collected in 2009—2015 from areas with different levels of contamination (from 0.5
to 9 μSv/h) around the Chernobyl nuclear power plant (village of Kopachi, towns of Yanov and
Prypyat). Control plants were collected in the village of Koncha Zaspa (KZ), where the level of
radiation was 0.15—0.20 μSv/h. Columbia0 strain was used as a laboratory control.
Growth rate of Arabidopsis was assessed by germinating seeds for 10 days on square plastic
plates with ½ MS medium including 0.5 % sucrose and cadmium chloride (CdCl2) in the con-
centrations ranging from 100 to 300 μM (Fig. 1).
Growth tests with bleomycin were performed with the application of a microphenotyping
system [8], which is the extremely useful tool for screening a bulk of material. In the experi-
Table 1. Sites of Arabidopsis plant collection in the Chernobyl zone
Location of sites Doze of radiation Geographical coordinates
10 km Chernobyl Zone, Kopachi village ~0.7 μSv/h 51°20'59.3"N; 30°07'33.4"E
5 km Chernobyl Zone, town of Pryp'yat' ~5 μSv/h 51°24'04.1"N; 30°03'54.8"E
5 km Chernobyl Zone, town of Yanov ~15 μSv/h 51°23'29.2"N; 30°03'23.6"E
Clean Control, Koncha Zaspa village, Kiev region ~0.20 μSv/h 50°29'N; 30°57'E
86 ISSN 1025-6415. Dopov. Nac. acad. nauk Ukr. 2017. № 4
G.V. Shevchenko, O.S. Talalaiev
ments with growth inhibition, seeds were pre-germinated for 3 days on simple MS medium and
then transferred to MS with bleomycin (1-7 μg/ml) for the next 3 days. Length of seedling roots
has been measured by ImageJ programme (www.imagej.net), and the growth inhibition has been
calculated using the formula I% = (μc − μt)/μc⋅100, where I% is the percentage of growth inhibi-
tion, μc — mean value for root length in the control, and μt is value for root growth rate under
the treatment. The average (from 100 plants for each type of treatment) size of the roots in cm
is shown in Fig. 2.
Comet assay method. DNA damage and kinetics of DNA recovery after treatment with radio-
mimetic bleomycin are evaluated by the means of single cell DNA gel electrophoresis (SCGE) or
so called “Comet assay” [7]. In particular, DNA-DSBs were detected by a neutral comet assay [7,
9]. For this, Arabidopsis seedlings were cut with a razor blade in phosphate-buffered saline (PBS,
pH8), and nuclear suspension was dispersed in melted 0.7 % LMT (low melting point) agarose
(15510-027, GibcoBRL, Gaithersburg, USA). Aliquots of LMT agarose with nuclear suspension
were immediately pipetted onto each of two agarose coated microscope slides (two duplicates per
slide). After solidification of agarose, the slides were put in a lysis solution (2.5 M NaCl, 10 mM
Tris–HCl, 0.1 M EDTA, 1% N-lauroyl sarcosinate, pH 7.6) for at least 1 h to dissolve cellular
membranes and to remove attached proteins. After lysis, electrophoresis was performed at 45V for
3 min. Then slides were dipped for 5 min in 70 % ethanol and 100% ethanol and air-dried. DNA
‘comets’ were visualized in epifluorescence with a
Nikon Eclipse 800 microscope after staining with
a SybrGold stain (Molecular-Probes Invitrogen,
USA) and evaluated by the Comet module of the
LUCIA cytogenetics software suite (LIM, Praha,
Czech Republic).
The fraction of DNA in comet tails (% of tail-
DNA) was used as a measure of DNA damage. In
Fig. 1. Decrease of root growth in seedlings of Arabi-
dopsis plants from the Chernobyl zone grown on the
MS medium with addition of Cd2+ (Col0 — Columbia,
KZ — Arabidopsis plants from Kiev region, Chern1 and
Chern2 — Arabidopsis plants from radioactively con-
taminated sites)
Fig. 2. Inhibition of root growth in Arabidopsis
plants from the Chernobyl zone grown on a me-
dium with addition of bleomycin
Table 2. Time for fast DNA recovery
accounting less than 60 % of damaged DNA
A.thaliana plants Time of recovery, min
Col0 3—5
KZ 10
Chern1 3—5
Chern2 3
87ISSN 1025-6415. Допов. Нац. акад. наук Укр. 2017. № 4
Efficient mechanism of DNA repair stabilizes genome of Arabidopsis thaliana from the Chernobyl zone
each experiment, the % T DNA damage was measured at time points of 0, 3, 5, 10, 20, and 60 min
after the treatment (1 h with 30 μg/ml bleomycin). Untreated plants were used as control. Mea-
surements included four independent gel replicas of 25 evaluated comets (Fig. 3, 4). Repair time
(tx) is defined as % damage remaining (tx) = mean % tail-DNA (tx) — mean % tail-DNA (control)
mean % tail-DNA (t0) — mean % tail-DNA (control)* 100. Dose-response was calculated as the
percentage of free DNA moved by electrophoresis into comet tail (% T DNA) (Fig. 3). Maximum
damage is normalized as 100 % at t = 0 for all plants (Fig. 4).The rate of DSB repair was deter-
mined by measuring the proportion of fragmented DNA at intervals during a recovery period
(Fig. 3). Data on the time of DNA recovery is presented in table 2.
Results and discussion. Root length measurements. Decrease of growth rate. In the set of
experiments with tolerance to mutagens, we have tested approximately 10 Arabidopsis plants col-
lected in the Chernobyl Exclusion zone. Control plants were collected from outside of the zone,
where the level of radiation and soil contamination were negligible (Table 1). All plants expressed
a dose-dependent decrease of growth (Fig. 1). Among Chernobyl samples, there were plants more
and less tolerant to genotoxins (Chern1 and Chern2). In general, Arabidopsis from Chernobyl
grew better on the medium with cadmium chloride (Fig. 1).
Calculation of relative growth inhibition under growth on bleomycin also has shown its lower
percentage in plants from Chernobyl (Fig. 2).
Thus, the above results confirmed our previous investigations proving the tolerance of Arabi-
dopsis from Chernobyl to the growth on a genotoxic medium [10].
Comet assay results. Our results have shown that both Arabidopsis plants grown in the
Chernobyl zone and outside of it expressed the dose-dependent DNA fragmentation, and there
was no significant difference in DNA damage by bleomycin between plants (Fig. 3, time point 0).
Fig. 4. Kinetics of genome repair in various
strains of Arabidopsis plants after treatment with
bleomycin
Fig. 3. DNA damage (%) in A. thaliana seedlings after treatment with bleomycin at the consecutive stages of
genome recovery
88 ISSN 1025-6415. Dopov. Nac. acad. nauk Ukr. 2017. № 4
G.V. Shevchenko, O.S. Talalaiev
All tested plants exhibited the sensitivity to genotoxin to a various extent. There were plants with
significant tolerance to bleomycin, as well as more susceptible to it (Fig. 3).
Starting from the first minutes of the plant recovery, there was a difference in the percent-
age of DNA damage (Figs. 3, 4). Chernobyl plants expressed a more efficient repair capacity than
the controls (Fig. 4). Moreover, the rates of DNA repair in all tested plants have a characteristic
biphasic profile: an initial rapid phase (1—5 min) accounting for less than 60 % of the fragmented
DNA followed by a slower phase (5—60 min) accounting for the remainder (Figs. 3, 4; Table 2).
To our surprise, control plants (KZ) were even more susceptible to DNA damage than A.thaliana
from Chernobyl and Col0 (Fig. 3).
Thus, it becomes evident that plants collected in the Chernobyl zone have efficient and fast
repair capacity. As is known, genetic responses to irradiation mainly depend on the efficiency of
DNA repair systems in restoring the integrity of genome and preserving the heritable informa-
tion. Our previous investigations on the sensitivity of Chernobyl plants to genotoxic agents have
shown the increased expression of marker genes connected with such DNA repair pathways as ho-
mologous recombination (HR) and non-homologous end joining (NHEJ) [10]. Both these DNA
repair pathways are known to operate in plants [11—13], and molecular components of these
pathways are highly conserved amongst eukaryotes [14]. Up-regulation of several key enzymes
like CyclB1:1, Rad 54, and Ku80 suggests the involvement of both HR and NHEJ, as well as cell
cycle regulation, in promoting plant genome stability in genotoxic environment of the Chernobyl
zone [10].
Fast recovery has been noted also by Kozak et al. (2009) [13] in their research of Arabidopsis
mutants providing evidence for a variation in the rate of DSB repair during the first 5—10 min.
Basing on our experience and emerging works in this field, we must stress out that the comet
assay method can be efficiently used for the rapid monitoring of genotoxicity induced in Arabi-
dopsis seedlings.
To sum up, we would like to note that the stability of Arabidopsis genome in the Chernobyl
zone depends upon the efficient work of DNA damage repair mechanisms. It is worth to mention
that the research of long term impact of radiation and heavy metals on plants in the nature has
been performed for the first time, and it is a great contribution into our understanding of the ad-
aptation ability of plants. In addition, it also provides knowledge for the biotechnology of stress
tolerant plants.
Acknowledgement. The investigation has been supported by Marie Curie Actions – Inter-
national Research Staff Exchange Scheme (IRSES) grant № 612587. Many thanks to our col-
laborators Prof. John Doonan (IBERS, Aberystwyth, UK) and Prof. Karel Angelis (Institute
of Experimental Botany, Prague, Czech Republic) who supervised the experimental work with
growth tests and comet assay.
89ISSN 1025-6415. Допов. Нац. акад. наук Укр. 2017. № 4
Efficient mechanism of DNA repair stabilizes genome of Arabidopsis thaliana from the Chernobyl zone
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2005.01548.xReceived 08.11.2016
Г.В. Шевченко, О.С. Талалаєв
Інститут ботаніки ім. М.Г. Холодного НАН України, Київ
E-mail: g_shevchenko@botany.kiev.ua
ЕФЕКТИВНИЙ МЕХАНІЗМ ВІДНОВЛЕННЯ ДНК СТАБІЛІЗУЄ
ГЕНОМ РОСЛИН ARABIDOPSIS THALIANA ІЗ ЧОРНОБИЛЬСКОЇ ЗОНИ
Досліджено стійкість проростків Arabidopsis thaliana із зони Чорнобильської АЕС до дії мутагенів (радіо-
міметиків і важких металів). Проаналізовано швидкість росту коренів і ступінь пошкоджень ДНК окремих
клітин рослин. Виявлено стійкість росту A. thaliana із зони на генотоксичному середовищі і встановлено,
що деякі рослини із зони ЧАЕС відновлюють свій геном швидше, ніж контрольні, зібрані поза зоною. За
результатами скринінгу визначено рослини різного ступеня чутливості до дії генотоксинів.
Ключові слова: пошкодження та відновлення ДНК, корені Arabidopsis thaliana, електрофорез ДНК окремої
клітини, Чорнобиль.
90 ISSN 1025-6415. Dopov. Nac. acad. nauk Ukr. 2017. № 4
G.V. Shevchenko, O.S. Talalaiev
Г.В. Шевченко, А.С. Талалаев
Институт ботаники им. Н.Г. Холодного НАН Украины, Киев
E-mail: g_shevchenko@botany.kiev.ua
ЭФФЕКТИВНЫЙ МЕХАНИЗМ
ВОССТАНОВЛЕНИЯ ДНК СТАБИЛИЗИРУЕТ ГЕНОМ РАСТЕНИЙ
ARABIDOPSIS THALIANA ИЗ ЧЕРНОБЫЛЬСКОЙ ЗОНЫ
Исследована устойчивость проростков Arabidopsis thaliana из зоны Чернобыльской АЭС к действию му-
тагенов (радиомиметиков и тяжелых металлов). Проанализированы скорость роста корней и степень по-
вреждения ДНК единичной клетки растений. Обнаружена устойчивость роста A. thaliana из зоны на ге-
нотоксичных средах и установлено, что некоторые растения из зоны ЧАЭС восстанавливают свой геном
быстрее, чем контрольные, собранные вне зоны. В результате скрининга определены растения различной
степени толерантности к воздействию генотоксинов.
Ключевые слова: повреждение и восстановление ДНК, корни Arabidopsis thaliana, электрофорез ДНК от-
дельной клетки, Чернобыль.
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